rs27025211 SNP Detail

Summary

• ID
  rs27025211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102517409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCTCT GCCTCCCAAG
  TGCTGGGATT AAAGGCGTGC GCCACCATGC CTGGCTCCCA GCTTTCTTTA ACAAGCAGTT
  CTTATATTAA TCCATTGCCC TTGTGATCTG GGATGCAAGT GTGGAAGACT CTTAGACAAG
  AAGTACTCAG CTGAGAGGCT GTGGGGAAGA GGACAGGTGG CATTTGGAGG CATAACTGGG
  R
  AAACCTCGGA CAGAAGTCCC CATTCCTCAT TCATCCCCAG GATTCCAATT CTTTCTGTCC
  CAGTGACAGC CAACCTTGGT GTTCCTGTCC CACTTCATGG AAAATTCTCT GATATTTTGA
  AGGGACCCTT TGGACACTGG AGACGTTTTG CACTACAAAG TCCCAAAGCA GGAAGGGGAG
  ACAAGCCTCT GCAGCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37279836	NES08552894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025211					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279836	NES08552894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102517409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3931	CpG island 3931	1065 bp distal
Rr457378	regulatory region 457378	1684 bp distal