rs27025216 SNP Detail

Summary

• ID
  rs27025216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102516321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCCCGTT TATGCATCCA
  TGCATGGAGC CATCTGTCAA GCTTAAATGA CTGCACGCCA GTCTCTGGTC GCTGAGGACG
  CTGGGCATTA GGCAGCTCGT ACGTGTTGGG TGTGGGCTGG GTCAGTTGCA CACACAAATG
  AAGTATCAAT GGGAAATGTG CTTGAGCCTG GTGCTAGGGA GTGTGCAGGG GGAGGCGTGC
  R
  TACATCAGCA GTCTCGGGAC GATGCTTGGG AAGGCAGCAA TGCAGGTCTT ATGGGGCAGA
  GCTGAGGTCC CATTGTAGTT ATGGCACCCA GTCAGCTCTG TCACATCTCC AGTGAGGGAG
  AACTGCAGGT GGTTTGTTAG TTCAGTTCAA TTGCACTCCA TGTATATGAG TCTTTGCAGG
  TTAGAAACTC ATGCAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37279841	NES08552951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025216					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279841	NES08552951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102516321 () rs orientation: forward

Symbol	Name	Function Class
2810433D01Rik	RIKEN cDNA 2810433D01 gene	1079 bp upstream
Cpgi3931	CpG island 3931	within coordinates
Rr457377	regulatory region 457377	1159 bp distal
Rr457378	regulatory region 457378	596 bp distal