rs27025221 SNP Detail

Summary

• ID
  rs27025221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102514255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAACCCT GTCTCGAAAA AACAAAACAA AACAAAACAA
  AAAAAGTTGC TGTAGTCATG GTGTCTCTTC ATAGCAATAA AACCCTAACT AGGACAGTAG
  S
  CAACAGGGAG CCTTCCCTGG TGAGTGTGTA CTTGACTCAT TTATGGAATG TGTGAGGAAC
  AGGAACATAG ACACACTTCT GAGCAGTCTC TCTCTCTCTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	PWD/PhJ
ss37279846	NES08552946	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	PWD/PhJ
rs27025221					SNP	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279846	NES08552946	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102514255 () rs orientation: forward

Symbol	Name	Function Class
2810433D01Rik	RIKEN cDNA 2810433D01 gene	within coordinates
Cpgi3931	CpG island 3931	1774 bp proximal
Rr457377	regulatory region 457377	229 bp proximal
Rr457378	regulatory region 457378	908 bp proximal