rs27025817 SNP Detail

Summary

• ID
  rs27025817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105349526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGTAAA ATGAGAAGCG
  GGAAGCTTTT TCTTAGAGAC CAAGGACCTA ACTCAGAGAT GATAGTAGTA GTGGTAATTA
  GTGATAATTA TTATTACTGA TTAACAGAGG AGGACATTGA GGACTAAGAG AGATAGTTGA
  ATAGAGATGA CACAGCCAAG GACTCCTGAC AAGGAATGGA TCCAGAGCCC GGGAGAAGAC
  K
  CCCATTCCCA GCAGATTAAT GTTGCCCACT AAGTAAGAAA AAAGACACTA CCATACTGGC
  ATATATTAGA TATGGATTTT TAATTTTCTG TTTTAAGAGC TAGAGGAAAA AAAAAAGTAC
  ATTTCACCCC CAAAAGGCTG TTGTGAGGTT TAAATGAGAG AAGACAAACA TTAATTGGTA
  GTTTCATTTT CCAAGGCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272846	NES08543879	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025817					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272846	NES08543879	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105349526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1718 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	1965 bp upstream
Rr457973	regulatory region 457973	1976 bp distal
Rr457974	regulatory region 457974	1475 bp distal
Rr457975	regulatory region 457975	1308 bp proximal
Tssr3699	transcription start site region 3699	1936 bp upstream
Tssr111264	transcription start site region 111264	1949 bp upstream