rs27025820 SNP Detail

Summary

• ID
  rs27025820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105349136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTCTCC TACCGTGTGG
  CTCCCAGTGA CCAAACCCGG CTTGTCGGGC TTGGTGGCAG GTACTTTTTA CCTGCAACAC
  CATGTTCTAG TCTTGTTCTC AGCCGGCTAA CAAAGATTCT CTATTAAATC GTTGACTGGT
  AAAGACATAC CATGGAACCT CTTTCCATGG TCTTTGCTGT TCAAAGGACT ATAATTAAGG
  R
  CCCCCAAGTT TGAGACACTT TCTGGGATGT AGCTCAGTGC CTGTCTGGCA TGAAGCTCTG
  GGTTTGATCC TTAGAGTGGA TGTGATGGCA GATGCCTGAA ATCCCAGTTC TTAGAGGAAG
  TGAGGGCCTT CTAGGGAAAC CTCCTCACTC TGTCAGAGAC TCTGTGTGGG GGGAGGGGGG
  TTGTGGGGAT TGCAGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272849	NES08543904	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025820					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272849	NES08543904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105349136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1328 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	1575 bp upstream
Rr457973	regulatory region 457973	1586 bp distal
Rr457974	regulatory region 457974	1085 bp distal
Rr457975	regulatory region 457975	1698 bp proximal
Tssr3699	transcription start site region 3699	1546 bp upstream
Tssr111264	transcription start site region 111264	1559 bp upstream