rs27025821 SNP Detail

Summary

• ID
  rs27025821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105349090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTG ACTGGTAAAG ACATACCATG
  R
  AACCTCTTTC CATGGTCTTT GCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37272850	NES08543903	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		G	A	A	A		A	A	G	G		A
ss38667687	mCV24767702	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		A
ss132763221	ENSMUSSNP7002937	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss323838325	CHEV_11_105319578	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27025821					SNP	A	A	A	A	G	A	A	G	G	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272850	NES08543903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105349090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1282 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	1529 bp upstream
Rr457973	regulatory region 457973	1540 bp distal
Rr457974	regulatory region 457974	1039 bp distal
Rr457975	regulatory region 457975	1744 bp proximal
Tssr3699	transcription start site region 3699	1500 bp upstream
Tssr111264	transcription start site region 111264	1513 bp upstream