rs27025824 SNP Detail

Summary

• ID
  rs27025824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105348664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCCCT GTCAGTCGTA
  CCCCAGGTCC ACCTCTCCCT GTGCCACGTA AACAGCCTAG GTCCCATGTC TTAATCACCA
  ACAAGCCACT CTCAGACTCC AGCACTGCCT AAGAAGTGAG CCCCAGACTC TGGACTGTGA
  CTGTCCCTAT TTGTTCCCCA GGACTTGCTT TCTTGGTTTT GTCCTTGAGT CATTTCTTGC
  M
  AGTTGCGGCT CTAGGACATG CCAAACCCTC CTTCTCACCT TCACGCCAAC TTCTAAGACG
  TATCTTGAGC AACACAGAGT CTAGACAAAA TATGCCTTGG GGAAGTCTTT GTTTTGGGCT
  CTTTCTCATC TGACCTTCAT TGCTCTCCCT TTCCAAACCA TTTTCTATTT TTAGTATGTT
  TAAAGATTTT TATTACATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272853	NES08543994	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025824					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272853	NES08543994	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105348664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	856 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	1103 bp upstream
Rr457973	regulatory region 457973	1114 bp distal
Rr457974	regulatory region 457974	613 bp distal
Tssr3699	transcription start site region 3699	1074 bp upstream
Tssr111264	transcription start site region 111264	1087 bp upstream