rs27025829 SNP Detail

Summary

• ID
  rs27025829
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105348148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TTTCACTGAG GGGCTAATAG
  K
  CAGCCTTGAG TCTTCTATTT CTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37272858	NES08543989	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	T	T		G	T	T	T		T	T	G	G		T
ss38737397	mCV24767689	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss132763205	ENSMUSSNP2152954	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323838321	CHEV_11_105318636	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27025829					SNP	T	T	T	T	G	T	T	G	G	T	T	T	T	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272858	NES08543989	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105348148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	340 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	587 bp upstream
Rr457973	regulatory region 457973	598 bp distal
Rr457974	regulatory region 457974	97 bp distal
Tssr3699	transcription start site region 3699	558 bp upstream
Tssr111263	transcription start site region 111263	1997 bp upstream
Tssr111264	transcription start site region 111264	571 bp upstream