rs27025830 SNP Detail

Summary

• ID
  rs27025830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105348076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGAAAA GATACTGCAC
  TCTTTGAAAT GGTTGTTATA CAGGGATCTC AGGCAGAATG TTCCGATCCA ACCTCAGAGC
  AGAAATAAAC AATTAAGGGA GGCACCCGAT CAGCTTCAGA ACGGAGCCCG AAAGCTAGCC
  TCTTAGTTAA CAGTAGTCAT TACGGGCTTC TCCAGGAGAG AGGAGCTTGG AGGTTTAGAC
  Y
  AGTGCCCACC AGGTTCTTGG TTTACATCAC TGTTTCTAGG CTGCGTTTAT TTTTCACTGA
  GGGGCTAATA GGCAGCCTTG AGTCTTCTAT TTCTTTTGCA TATTTAGGTA CTTAGTACCT
  TGCTGACTGA TGTCACCTAA GGGCATTTTA GATTGGGCGG AGAGCAAAGA AGATGGACAA
  TAGAAATTGT TGGAACTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272859	NES08543988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025830					SNP	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272859	NES08543988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105348076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	268 bp distal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	515 bp upstream
Rr457973	regulatory region 457973	526 bp distal
Rr457974	regulatory region 457974	25 bp distal
Tssr3699	transcription start site region 3699	486 bp upstream
Tssr111262	transcription start site region 111262	1962 bp upstream
Tssr111263	transcription start site region 111263	1925 bp upstream
Tssr111264	transcription start site region 111264	499 bp upstream