rs27025831 SNP Detail

Summary

• ID
  rs27025831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105347671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCAGC TGTCCGCCGC
  GGCCTCCGGC CTTTCTTGGG GTGGAGACGG TGGGGGCGGC TGCCTGGCGT CCTCCCGTTT
  CCTTGGCAAC CGTGCCTCCC TCCTCGCGCG GAGCCTGTGC CGCTAGTCGC GAGGGAACGT
  GGATCGTGGG GGTGGGGCAG GGCTACGGCC CCGGGGGTCC TGAGTCCACA CGTGGGCGGC
  Y
  CTGCCGGTTG CCGTGGGAAC GAGAAGGGAT GCAGTTGAGA AAGGAAAGCA GTGATGGCGG
  CTGGCTTGGA AGAGATGCTC TAGGAATAGG CACTCTGATT TTGTCTGTGT TCACGCCCAG
  ACTCAGTGTT GTTTCTTATA AGATGAAGAT TAGAAAATGG GAGAGGAAAA AAAATTAAAT
  AAAACAGTAA AGGGAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272860	NES08543987	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025831					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272860	NES08543987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105347671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	within coordinates
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	110 bp upstream
Rr457973	regulatory region 457973	121 bp distal
Rr457974	regulatory region 457974	within coordinates
Tssr3699	transcription start site region 3699	81 bp upstream
Tssr111262	transcription start site region 111262	1557 bp upstream
Tssr111263	transcription start site region 111263	1520 bp upstream
Tssr111264	transcription start site region 111264	94 bp upstream