rs27026644 SNP Detail

Summary

• ID
  rs27026644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121326934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGTTT ACCCTGGAAG
  CATGGCTGAA GTTTGCAAAT GCCCTTCCAC AACAGGCTGC TCAGCACATG CCTCTTTGTC
  CCAAGTGCAG GTTGGCGATT TGAGTGTACC TGTCTGACTT TTCCCCTTGA AAGGGGATTA
  AGGGGGAAGA ATGGTTTACA TGTGTGATAA TAAATGTTTT GGCTTCAAGT TTCACTTTTA
  R
  TCAACGATAT CCAATTTATT TTGTGTGTAT GTATGTATGT GTGTGTGTGT GTGAAAGCTC
  TGGTTTGCAT ATTCATGACG TGCGTAGAAG TCAGTGGATA ACTTTTGGGG AGTTGGTTCT
  GTCCTTCGGC CTTATTTTGT GGCAAGGTTT TTCTTGTTTC TGCTGCCACA CGGCCTGTTC
  TAGGCTAGCT GGCCTGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236081	NES08513737	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026644					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236081	NES08513737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121326934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	868 bp distal
Fn3k	fructosamine 3 kinase	Intron
Rr461975	regulatory region 461975	1130 bp distal
Tssr106404	transcription start site region 106404	1121 bp downstream