rs27026645 SNP Detail

Summary

• ID
  rs27026645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121326810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGTTC TGGACTCTGT
  GGGGAGTAGT TCTGGATAGT GGTTATAGTA TCTAGGATGC TCCTGGTATC ATTAGAGACG
  GTGAAGGTAG CACCTCCCTG CTTTCTGTGC AGCGTTGGCC TGGTTTGGAG GTTTACCCTG
  GAAGCATGGC TGAAGTTTGC AAATGCCCTT CCACAACAGG CTGCTCAGCA CATGCCTCTT
  K
  GTCCCAAGTG CAGGTTGGCG ATTTGAGTGT ACCTGTCTGA CTTTTCCCCT TGAAAGGGGA
  TTAAGGGGGA AGAATGGTTT ACATGTGTGA TAATAAATGT TTTGGCTTCA AGTTTCACTT
  TTAATCAACG ATATCCAATT TATTTTGTGT GTATGTATGT ATGTGTGTGT GTGTGTGAAA
  GCTCTGGTTT GCATATTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37236082	NES08513736	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27026645					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236082	NES08513736	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121326810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	744 bp distal
Fn3k	fructosamine 3 kinase	Intron
Rr461975	regulatory region 461975	1006 bp distal
Tssr106404	transcription start site region 106404	997 bp downstream