rs27026647 SNP Detail

Summary

• ID
  rs27026647
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121326704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGCAT GGAAAACTGT
  AAGACAACTG AGGACTGTTA GCTAGAGTCC CTGAGAGCAA GCTGTGCTGG CACAGCATGG
  TGCTCCCCTT CTGTGGGGGG AGGACTCCAG AGGTTCTGGA CTCTGTGGGG AGTAGTTCTG
  GATAGTGGTT ATAGTATCTA GGATGCTCCT GGTATCATTA GAGACGGTGA AGGTAGCACC
  W
  CCCTGCTTTC TGTGCAGCGT TGGCCTGGTT TGGAGGTTTA CCCTGGAAGC ATGGCTGAAG
  TTTGCAAATG CCCTTCCACA ACAGGCTGCT CAGCACATGC CTCTTTGTCC CAAGTGCAGG
  TTGGCGATTT GAGTGTACCT GTCTGACTTT TCCCCTTGAA AGGGGATTAA GGGGGAAGAA
  TGGTTTACAT GTGTGATAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236084	NES08513734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026647					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236084	NES08513734	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121326704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	638 bp distal
Fn3k	fructosamine 3 kinase	Intron
Rr461975	regulatory region 461975	900 bp distal
Tssr106404	transcription start site region 106404	891 bp downstream