rs27026654 SNP Detail

Summary

• ID
  rs27026654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121325952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGGTC CCCGACTCCC
  CCTCCTCTGC GTCACCTGAC CGCATTCTGC ACCTCAACTC TCCATGGAGC AGCTGCTGCG
  CGCCCAGCTT CACACCACAA CACTGCGGGC CTTTGGGAGC TCCGGAGGGG GCTGCATCAG
  CGAGGGCTAT GCCTACTACA CTGACAGTGG CCCCGTGTTT GTCAAGGTCA ATCGCAGGAC
  R
  CAGGTGCGCT GCCCGGTATA CAAGGATAAA GTCTAGGAAG GGGAAAGAGG AATGCAGGAT
  TCTGAGAAGT GGTGGAGGAA CTAGACCTGG CGTACCCAAC GCTCTGCTGA GGGGTCAACC
  AGCACTTGCA TGCAGGCAGC TTCTTGGGAC CAGAGGGTTT CTCTTTGCTG CATGATTATT
  TTCTTGCTTT TGCTCCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37236091	NES08513767	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27026654					SNP	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236091	NES08513767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121325952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	within coordinates
Fn3k	fructosamine 3 kinase	Coding-Synonymous
Rr461974	regulatory region 461974	1704 bp distal
Rr461975	regulatory region 461975	148 bp distal
Tssr106404	transcription start site region 106404	139 bp downstream