rs27026657 SNP Detail

Summary

• ID
  rs27026657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121325529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCAGTT ATGCAGAGAG
  CACGGTGCCC AGGGTAGACC CCAGGTGGGT GCAGATGTTC TGGGACTTCA CGTGCATTCT
  GTGAGGACAC TCCCTTTCTG TCTCGTGGCT TTACAGAACA CCCGCCACCC GGTCTGGGTT
  CTGTTTCTAT AGGGTGTGTT GTTGGAGGAG AAATTCTGAA ATGAGCTTAG TAATGAGGGT
  R
  TCGAGAGCTT TTGCATCCCT CCTTCTCCCA CAGCAGCCCC GGGTGGAAAT CGCCTTGGAG
  AGAGAAATTC CTCGCTCTCT TCCCCCTCCC ACCCTAGCTC TGGTGCCCAA GAGCATGCAG
  GGATAGCATG CACCGGAGGT AGCTAGGAGC CAGCAAGCCT GTGTCAGACA ATGTTGTGAC
  AGCGCTACGC CCCGCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236094	NES08513764	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	G	A	A	G	G
ss38749118	mCV27546112	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026657					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236094	NES08513764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121325529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	104 bp proximal
Fn3k	fructosamine 3 kinase	250 bp upstream
Rr461974	regulatory region 461974	1281 bp distal
Rr461975	regulatory region 461975	within coordinates
Tssr106404	transcription start site region 106404	245 bp upstream