rs27026659 SNP Detail

Summary

• ID
  rs27026659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121325311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTGCT ATCACACCTC
  CCACAGTAGC CTCTATCACT CAGCCCTGTG GCATTAAGAG GTGCCACTAG GGCCTAGCCA
  GGGCACCCCC ATGGCTAGGA CTCCACCCTT ATCTGGACAG TGAGATCTTC TCCATGGGAT
  ATCTAAGTCT CTAGGCTATG CCTTGTGTTG CAAGGATAAA GAAGCCCTGA CCCAAATCTT
  Y
  CTGCGCTCTT TCCTGATTCT CCCAGTTATG CAGAGAGCAC GGTGCCCAGG GTAGACCCCA
  GGTGGGTGCA GATGTTCTGG GACTTCACGT GCATTCTGTG AGGACACTCC CTTTCTGTCT
  CGTGGCTTTA CAGAACACCC GCCACCCGGT CTGGGTTCTG TTTCTATAGG GTGTGTTGTT
  GGAGGAGAAA TTCTGAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236096	NES08513762	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026659					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236096	NES08513762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121325311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	322 bp proximal
Fn3k	fructosamine 3 kinase	468 bp upstream
Rr461974	regulatory region 461974	1063 bp distal
Rr461975	regulatory region 461975	within coordinates
Tssr106404	transcription start site region 106404	463 bp upstream