rs27026662 SNP Detail

Summary

• ID
  rs27026662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121324970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGATATT TGTGAATGTA
  GCTGACATTC ACTTGTGCCC TGGCACATAC TCAAAGCTCA GCAATGGATC TATCCACCCA
  CTAATCTTCC TAGTCCCTTT ATAGTCAGCT GGGGACATTG CAGTACAAGA GAGGGACCAG
  CAGCTCATGG TGGGAGCTGC CATCTGAGGC AACCTCTCCT AAAACACTGA AGGGTTAGCA
  Y
  AGGCTGTCTC TTATATCAGT CTGTGGATGT GTTCTTATAT GTATGTGTGT GTGTGCCCAT
  GCATCCATGA GCATATATGT CTGCTGCTTT CCTATCATGG CTGTCTGAAA TCCAGAGTTC
  CACCTACCCT GGGTGGAGTA GGCTGCTGCT ATCACACCTC CCACAGTAGC CTCTATCACT
  CAGCCCTGTG GCATTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236099	NES08513759	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026662					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236099	NES08513759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121324970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	663 bp proximal
Fn3k	fructosamine 3 kinase	809 bp upstream
Rr461974	regulatory region 461974	722 bp distal
Rr461975	regulatory region 461975	279 bp proximal
Tssr106404	transcription start site region 106404	804 bp upstream