rs27026667 SNP Detail

Summary

• ID
  rs27026667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121323994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGCAGA AAATGGCCAC
  TGTACTCCTT TCCTCACAGA TATTACTGCC TGAAGACTGA TCCCCGCAGG GACTGCTCCT
  ACTGAGATCA GTTAAGCCCG CCCTCTTGAT TTAGCTGCAT ACCACAACCC TGCCTACTCG
  TTCAGCTGTA AATAATAAAC ACACTGATGT TCTGGGATCT TGAAACTTCT CCATCAGACA
  Y
  CCTTCCCGGC TTTTCTGTGT GTTCATGTGT GTTTTTTCCT TCATTCCCTC ACTACCCTAA
  TTAGGTCAGT CCCTGGAGTT GTGTAAGACT CCGCACAGAG GGAAGACACG GACACTGCAC
  TTGGCTTTAG AATCAGGTTA GAAAAGGTCG TTGGGGTAGA ACCCTGGCTC TGCAGTCCGC
  CACTCTGGCT ACCATGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236108	NES08513812	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C	C
ss38731688	mCV27546135	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss132912424	ENSMUSSNP6021151	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026667					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236108	NES08513812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121323994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1639 bp proximal
Fn3k	fructosamine 3 kinase	1785 bp upstream
Fn3krp	fructosamine 3 kinase related protein	1880 bp downstream
Rr461974	regulatory region 461974	within coordinates
Rr461975	regulatory region 461975	1255 bp proximal
Tssr106404	transcription start site region 106404	1780 bp upstream