rs27026669 SNP Detail

Summary

• ID
  rs27026669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121323927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAAATC CATGAGGACG
  CAGAGAGTTA ACAAAGCTTT CCTCTGATCT GAGTGGGAAG TCAATGCTGC CTGCAGAAAA
  TGGCCACTGT ACTCCTTTCC TCACAGATAT TACTGCCTGA AGACTGATCC CCGCAGGGAC
  TGCTCCTACT GAGATCAGTT AAGCCCGCCC TCTTGATTTA GCTGCATACC ACAACCCTGC
  Y
  TACTCGTTCA GCTGTAAATA ATAAACACAC TGATGTTCTG GGATCTTGAA ACTTCTCCAT
  CAGACATCCT TCCCGGCTTT TCTGTGTGTT CATGTGTGTT TTTTCCTTCA TTCCCTCACT
  ACCCTAATTA GGTCAGTCCC TGGAGTTGTG TAAGACTCCG CACAGAGGGA AGACACGGAC
  ACTGCACTTG GCTTTAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236110	NES08513808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026669					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236110	NES08513808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121323927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1706 bp proximal
Fn3k	fructosamine 3 kinase	1852 bp upstream
Fn3krp	fructosamine 3 kinase related protein	1813 bp downstream
Rr461974	regulatory region 461974	within coordinates
Rr461975	regulatory region 461975	1322 bp proximal
Tssr106404	transcription start site region 106404	1847 bp upstream