rs27026671 SNP Detail

Summary

• ID
  rs27026671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121323917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGAGATCG ACTCCAAATC
  CATGAGGACG CAGAGAGTTA ACAAAGCTTT CCTCTGATCT GAGTGGGAAG TCAATGCTGC
  CTGCAGAAAA TGGCCACTGT ACTCCTTTCC TCACAGATAT TACTGCCTGA AGACTGATCC
  CCGCAGGGAC TGCTCCTACT GAGATCAGTT AAGCCCGCCC TCTTGATTTA GCTGCATACC
  R
  CAACCCTGCC TACTCGTTCA GCTGTAAATA ATAAACACAC TGATGTTCTG GGATCTTGAA
  ACTTCTCCAT CAGACATCCT TCCCGGCTTT TCTGTGTGTT CATGTGTGTT TTTTCCTTCA
  TTCCCTCACT ACCCTAATTA GGTCAGTCCC TGGAGTTGTG TAAGACTCCG CACAGAGGGA
  AGACACGGAC ACTGCACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236112	NES08513803	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	G	A	A	A	A
ss38676179	mCV27546136	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss132912420	ENSMUSSNP5312757	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026671					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236112	NES08513803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121323917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1716 bp proximal
Fn3k	fructosamine 3 kinase	1862 bp upstream
Fn3krp	fructosamine 3 kinase related protein	1803 bp downstream
Rr461974	regulatory region 461974	within coordinates
Rr461975	regulatory region 461975	1332 bp proximal
Tssr106404	transcription start site region 106404	1857 bp upstream