rs27026834 SNP Detail

Summary

• ID
  rs27026834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGTC TTGAGATCTG
  CCTGCCTCTG CCTCCTGAGT GTGGTATTAA AGACATCGGC CACCACTACC CAGCTAGAAT
  GGATGGTCTC GCTGAGCCAT TTTTGACTCA GAATACTATC TTTGACTCAA GATTACACTG
  TTGCTAACCA AGAATACCTG AGCTGTAATT ATTTCAGAGG ACCATGACAT GGCAACAATC
  R
  CCCACACAGA AAAACCTTCC TTAGAGAGAG CGCTTTAGAA TGTCTGAGTC CAGACAGCCT
  TTCCCTATTG ATTTGCCAAC TAAAGCTGCA CTAGAGTGTA TTAGATAAAT TCTACTTTTG
  CCTTTTTCTG TCACAACTCA TATCTCACCA GCCTATCATT GTCATCCATG TGGGATGACA
  GCATTTGAGG TAAGAGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236278	NES08514378	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G
ss38657125	mCV24693209	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G	G
ss132911624	ENSMUSSNP6962783	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026834					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236278	NES08514378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	1035 bp distal
Rab40b	Rab40B, member RAS oncogene family	1306 bp upstream
Tssr112458	transcription start site region 112458	1290 bp upstream