rs27026835 SNP Detail

Summary

• ID
  rs27026835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCAATC GTGCCTCCTC
  TCTGTTAAGA AGGATACATT TCCGGATGGA AAAGAAAAAG CAGTGGATGA AAATTACGAA
  AGCATTTGTG AACATTGTTC TAAGCGCCAC AGCTGTGCTG TGATTCAGGA CAAGGCCGGT
  TTGGCTCAGA ACAGGCTGGT CTTGGAGCAA GGTGACCGCT GCCTCCCTGC AGGAACACTA
  Y
  CCTTTCAAAG AGTTGACTAT AATAAGCTCT AATTACAAGA TATGGCTGCC AGTCTAGAAT
  AGGTAATTGA GATAGGGTTT TTCGAGACAG GGTTTCCCTG AGTAGCCCTT TCTGTCCTGA
  AACTGGCTTT GTAGATCAGG CTGGTCTTGA GATCTGCCTG CCTCTGCCTC CTGAGTGTGG
  TATTAAAGAC ATCGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236279	NES08514400	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026835					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236279	NES08514400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	698 bp distal
Rab40b	Rab40B, member RAS oncogene family	969 bp upstream
Tssr112458	transcription start site region 112458	953 bp upstream