rs27026836 SNP Detail

Summary

• ID
  rs27026836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATCGTG TGCCTGTGAG
  GTTGTTGTCA GAGAGCACAT GACGGGGACC TGTCTGTCTC TGATCTCTTT TACCCCAAGG
  GAGCAGTGAA TCTGCTCTCT GTTCAGGAGC ACCTCACCAG TGGGAACTAA GTTATTTAGA
  GTAATCATAG TTTAGCATCC CCGCTACCTA CATCTTTATA CAACCTGAAG TGGAAGCACC
  Y
  CTTGCAATCG TGCCTCCTCT CTGTTAAGAA GGATACATTT CCGGATGGAA AAGAAAAAGC
  AGTGGATGAA AATTACGAAA GCATTTGTGA ACATTGTTCT AAGCGCCACA GCTGTGCTGT
  GATTCAGGAC AAGGCCGGTT TGGCTCAGAA CAGGCTGGTC TTGGAGCAAG GTGACCGCTG
  CCTCCCTGCA GGAACACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236280	NES08514399	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026836					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236280	NES08514399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	498 bp distal
Mir7236	microRNA 7236	1816 bp upstream
Rab40b	Rab40B, member RAS oncogene family	769 bp upstream
Rr461969	regulatory region 461969	1033 bp distal
Rr461970	regulatory region 461970	771 bp distal
Rr461971	regulatory region 461971	279 bp distal
Tssr112458	transcription start site region 112458	753 bp upstream