rs27026840 SNP Detail

Summary

• ID
  rs27026840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGTTGT GAGTTTCAGC
  ACCAAGTGGA CACATGGACA AGTGCACCTC TAAAGGTGTC TGCTAGTGGG TGCCTCGAGG
  TCTCCACGGG TTTCTGTCCA TGCATGTCAG TGTGAGTGTG TGTGTGTGTG TGTGCATCGT
  GTGCCTGTGA GGTTGTTGTC AGAGAGCACA TGACGGGGAC CTGTCTGTCT CTGATCTCTT
  W
  TACCCCAAGG GAGCAGTGAA TCTGCTCTCT GTTCAGGAGC ACCTCACCAG TGGGAACTAA
  GTTATTTAGA GTAATCATAG TTTAGCATCC CCGCTACCTA CATCTTTATA CAACCTGAAG
  TGGAAGCACC TCTTGCAATC GTGCCTCCTC TCTGTTAAGA AGGATACATT TCCGGATGGA
  AAAGAAAAAG CAGTGGATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236284	NES08514395	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236284	NES08514395	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	367 bp distal
Mir7236	microRNA 7236	1685 bp upstream
Rab40b	Rab40B, member RAS oncogene family	638 bp upstream
Rr461969	regulatory region 461969	902 bp distal
Rr461970	regulatory region 461970	640 bp distal
Rr461971	regulatory region 461971	148 bp distal
Tssr112458	transcription start site region 112458	622 bp upstream