rs27026841 SNP Detail

Summary

• ID
  rs27026841
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGCCTGG AAACGAGAAT TTGTCCCACA GCTCCACAGA
  GCTTTGAATG CTAGCGTGAG AGCTTAGCAT GTTCATGTGT TCATGTAGGC ATCAGATGTA
  M
  CTAAAGTTAC AGGTAGTTGT GAGTTTCAGC ACCAAGTGGA CACATGGACA AGTGCACCTC
  TAAAGGTGTC TGCTAGTGGG TGCCTCGAGG TCTCCACGGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	MOLF/EiJ	NZW/LacJ
ss37236285	NES08514394	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	MOLF/EiJ	NZW/LacJ
rs27026841					SNP	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236285	NES08514394	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	156 bp distal
Mir7236	microRNA 7236	1474 bp upstream
Rab40b	Rab40B, member RAS oncogene family	427 bp upstream
Rr461969	regulatory region 461969	691 bp distal
Rr461970	regulatory region 461970	429 bp distal
Rr461971	regulatory region 461971	within coordinates
Tssr112458	transcription start site region 112458	411 bp upstream