rs27026842 SNP Detail

Summary

• ID
  rs27026842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCTCCT GCAAACCAAT
  GGAAGAATGG CATAGAGAGG AGGGGCGTGG TCAGTGTTTA CTCCCTCCCC TGTATCAGTG
  CGTAACAGGA GTTGGCTCCA GATTGGTGTG GGAAGTGTTG AATCCCTGCC TGGAAACGAG
  AATTTGTCCC ACAGCTCCAC AGAGCTTTGA ATGCTAGCGT GAGAGCTTAG CATGTTCATG
  W
  GTTCATGTAG GCATCAGATG TAACTAAAGT TACAGGTAGT TGTGAGTTTC AGCACCAAGT
  GGACACATGG ACAAGTGCAC CTCTAAAGGT GTCTGCTAGT GGGTGCCTCG AGGTCTCCAC
  GGGTTTCTGT CCATGCATGT CAGTGTGAGT GTGTGTGTGT GTGTGTGCAT CGTGTGCCTG
  TGAGGTTGTT GTCAGAGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236286	NES08514393	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026842					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236286	NES08514393	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	133 bp distal
Mir7236	microRNA 7236	1451 bp upstream
Rab40b	Rab40B, member RAS oncogene family	404 bp upstream
Tssr112458	transcription start site region 112458	388 bp upstream