rs27026846 SNP Detail

Summary

• ID
  rs27026846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121279250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTCCACC GGTCGGGGGA
  GCTTGACAGC TGAAGAGCCC CGCCCACCTT ACCTTGCCAT TGGCGAGCCT CAGTTGCTGA
  GGTATATACA CATGCTCATT GGTTAGCAAG CTCGCCCATC TATTTCTTTA CGCCTCCGCA
  CCACGCCCAC CGCCTCTCCT GGGAGGACTT GTTGCCTAAG CCAATGGAGG TCCGAAGGCC
  R
  AGCCAGAAGA AACCGAAGGG GGGGGGAGAG GTTTGCTCCT GCAAACCAAT GGAAGAATGG
  CATAGAGAGG AGGGGCGTGG TCAGTGTTTA CTCCCTCCCC TGTATCAGTG CGTAACAGGA
  GTTGGCTCCA GATTGGTGTG GGAAGTGTTG AATCCCTGCC TGGAAACGAG AATTTGTCCC
  ACAGCTCCAC AGAGCTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37236290	NES08514389	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G
ss132911604	ENSMUSSNP5006773	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27026846					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236290	NES08514389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121279250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	within coordinates
Mir7236	microRNA 7236	1220 bp upstream
Rab40b	Rab40B, member RAS oncogene family	173 bp upstream
Tssr112458	transcription start site region 112458	157 bp upstream