rs27026849 SNP Detail

Summary

• ID
  rs27026849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121278284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAAAGAA CAGAGGGTGG
  CAGGCCTCAG GGCAGGGTCT GTATTAGAAA GGTGTGTTGA AACCCCCACA ACAACACAAT
  AGGCATTCAC TGAAGTCTGT GCACAGCCAC AGTCAAAGGG ATGGATCACT ACGTGACTAT
  TCTTGGATGT TCTGCTCAGG ATTCTGCCAC TCTGTCTCCT TCCTCTGGGG TGCAAGATCT
  Y
  AAACTTCAGG CTTCTAGGAC ACTCACTGCT CACTGCCCTG GAGCCTGAGA CGCTCTGGTC
  TCACCCGTGT CCAGTCTCCT GGACTCCAGT CTCTTAGTTG GGTTCCTTCC TACACCCTAG
  CCAATTCTAC AGGGTCACTT AGATTCCTCT TCCTCCTCTT GGAAGTCCTG TCCACTAGGA
  CACAGAGCTT AGTGCTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236293	NES08514384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026849					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236293	NES08514384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121278284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	71 bp proximal
Mir7236	microRNA 7236	254 bp upstream
Rab40b	Rab40B, member RAS oncogene family	within coordinates
Rr461969	regulatory region 461969	508 bp proximal
Rr461970	regulatory region 461970	770 bp proximal
Rr461971	regulatory region 461971	783 bp proximal
Tssr112458	transcription start site region 112458	728 bp downstream