rs27026850 SNP Detail

Summary

• ID
  rs27026850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121278215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACACAGT TTTAGGGCCT
  TGCCTTGTGG CATTGCCAGG GGGCTGGAGA TGCAGGAAGC AGTCTGCAAG CCCAAAGAAC
  AGAGGGTGGC AGGCCTCAGG GCAGGGTCTG TATTAGAAAG GTGTGTTGAA ACCCCCACAA
  CAACACAATA GGCATTCACT GAAGTCTGTG CACAGCCACA GTCAAAGGGA TGGATCACTA
  Y
  GTGACTATTC TTGGATGTTC TGCTCAGGAT TCTGCCACTC TGTCTCCTTC CTCTGGGGTG
  CAAGATCTTA AACTTCAGGC TTCTAGGACA CTCACTGCTC ACTGCCCTGG AGCCTGAGAC
  GCTCTGGTCT CACCCGTGTC CAGTCTCCTG GACTCCAGTC TCTTAGTTGG GTTCCTTCCT
  ACACCCTAGC CAATTCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236294	NES08514383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026850					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236294	NES08514383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121278215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	140 bp proximal
Mir7236	microRNA 7236	185 bp upstream
Rab40b	Rab40B, member RAS oncogene family	within coordinates
Rr461969	regulatory region 461969	577 bp proximal
Rr461970	regulatory region 461970	839 bp proximal
Rr461971	regulatory region 461971	852 bp proximal
Tssr112458	transcription start site region 112458	797 bp downstream