rs27026852 SNP Detail

Summary

• ID
  rs27026852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121277932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAAGCCA ACCAGCAGCA
  AGTCTGCTCA CATGTCATCC ACATCTTTCT CTCTGCCCAC ATCAGTCATT TACTGTGGGA
  CTCACGTCCC CTTTGGGGGC TTGTTAAACG TTTTACTCTT TTGCCTCTGC TGAAGCCTGG
  GTGTTTCATT GAGCACCAGG ACCTGAAGAC AGCCCTGTCT TCAGTCACGC CCTTGTTCTC
  R
  CAGTAATGCT GTCCAACAGA GCTTTGTCCT AAAGGAAAGG TCTAAATCTG TGCGGTCCAA
  CCTGGTAGTT AAATGGCATT GGACCACACA GTTTTAGGGC CTTGCCTTGT GGCATTGCCA
  GGGGGCTGGA GATGCAGGAA GCAGTCTGCA AGCCCAAAGA ACAGAGGGTG GCAGGCCTCA
  GGGCAGGGTC TGTATTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236296	NES08514417	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G
ss38845458	mCV24693011	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss132911596	ENSMUSSNP5825744	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27026852					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236296	NES08514417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121277932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	423 bp proximal
Mir7236	microRNA 7236	39 bp downstream
Rab40b	Rab40B, member RAS oncogene family	within coordinates
Rr461969	regulatory region 461969	860 bp proximal
Rr461970	regulatory region 461970	1122 bp proximal
Rr461971	regulatory region 461971	1135 bp proximal
Tssr112458	transcription start site region 112458	1080 bp downstream