rs27026853 SNP Detail

Summary

• ID
  rs27026853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121277920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGGGCC TTGCTCAAGC
  CAACCAGCAG CAAGTCTGCT CACATGTCAT CCACATCTTT CTCTCTGCCC ACATCAGTCA
  TTTACTGTGG GACTCACGTC CCCTTTGGGG GCTTGTTAAA CGTTTTACTC TTTTGCCTCT
  GCTGAAGCCT GGGTGTTTCA TTGAGCACCA GGACCTGAAG ACAGCCCTGT CTTCAGTCAC
  R
  CCCTTGTTCT CGCAGTAATG CTGTCCAACA GAGCTTTGTC CTAAAGGAAA GGTCTAAATC
  TGTGCGGTCC AACCTGGTAG TTAAATGGCA TTGGACCACA CAGTTTTAGG GCCTTGCCTT
  GTGGCATTGC CAGGGGGCTG GAGATGCAGG AAGCAGTCTG CAAGCCCAAA GAACAGAGGG
  TGGCAGGCCT CAGGGCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37236297	NES08514416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27026853					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236297	NES08514416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121277920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	435 bp proximal
Mir7236	microRNA 7236	51 bp downstream
Rab40b	Rab40B, member RAS oncogene family	within coordinates
Tssr112458	transcription start site region 112458	1092 bp downstream