rs27027808 SNP Detail

Summary

• ID
  rs27027808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114129159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTACCAC CAGGACCTGC
  TCATGTTCAA GGGAAGGCAC ACAGACTTCA TCACCAGGAG TGGGTGTGGC AAGTCTTAAA
  GAGAGTCCAT GGCATGGAAA TAATGCATGC TATTCCTTTA AGAAAACACG ACCCACCACA
  GGAGACAGTC CCTCCTCCAG GAAGCCCTGG GTGCTGTAGA GAGAAGGTTG AAGGTGAAGC
  R
  TCCTCGTCCT CATCCTCATC CTTGCAGCAT TGCGTGTTGC AGCACTTGCT CTCCAGCTGC
  AGACACTTTT TTTTGGAGGT TATGGAACCC TTGGGAGGTG GAGCTCACCA GAGAAAGTGG
  GACGCTCCTG GGGATGGGCT TGAAGTTGTA CAGCCCATCA TCACTTCCTG TCTGTCTTCT
  ATTTCCTGCC CGTGGATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37250030	NES08518799	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27027808					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37250030	NES08518799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114129159 () rs orientation: forward

Symbol	Name	Function Class
Gm11690	predicted gene 11690	within coordinates
Rr248569	regulatory region 248569	159 bp distal
Rr248570	regulatory region 248570	within coordinates
Rr369426	regulatory region 369426	90 bp upstream
Tssr111662	transcription start site region 111662	1180 bp upstream
Tssr111663	transcription start site region 111663	1120 bp upstream