rs27029385 SNP Detail

Summary

• ID
  rs27029385
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119824982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAGGA CAGCCTAAGA
  TCCCTTGCTT ACAGGGACAA TGACGTGTGG GAGGCTCTGT GCAGGATGTG GTGAGAGCAG
  CAACCCCAGG TTAGCAAGGG CTACGGAGGG AGGGTGGTAG TGGGGTATGA AGGTGCTGGT
  CCTCAGAGCA GAGCAGCGCA GAGCAGAGCA GGGTTAGCTT CTGTGGCTCT TCAACAAGCC
  S
  GTTCTTGCCA GGTACAGCAG GCATAGTTGC TACCTATGGG AAGGAGGTGT GTACTACCCC
  ATCATCAGGC CTGTAACTGG GGACACCCAC CCTGCCCAGG GTCACTGTTC CCCTTCCAGC
  ACCCTGTGAG TGAGGCTCAG CTACTCCACC CCTCAGTCCT GGGGTGCTGT CAGCTGCAGG
  GAATGGCCCT GTCCGTGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37239121	NES08507535	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27029385					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37239121	NES08507535	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119824982 () rs orientation: forward

Symbol	Name	Function Class
2900060N18Rik	RIKEN cDNA 2900060N18 gene	621 bp upstream
Gm11767	predicted gene 11767	within coordinates
Rr386762	regulatory region 386762	1933 bp upstream
Rr461475	regulatory region 461475	1854 bp distal
Rr461476	regulatory region 461476	within coordinates
Rr461477	regulatory region 461477	696 bp proximal
Rr461478	regulatory region 461478	1173 bp proximal
Rr461479	regulatory region 461479	1204 bp proximal
Rr461480	regulatory region 461480	1424 bp proximal
Rr461481	regulatory region 461481	1501 bp proximal