rs27029387 SNP Detail

Summary

• ID
  rs27029387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119822873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGGAAA ATCAATGCTC
  TGAGAACGAT CAAAGCACAC AAAGGTGTAA GCATCGTCTC TACAAAAGCA GCAGAGAGCA
  GCGGAAGCAA CAGCGATGGC CGGCAGGGTT AGGATTCCAG AGGGGCGGAC AGCAGAGAGC
  AGGGCTGACC ATCTGCAGCT GGCACTTGCC AAGTTTTGTC ACACTGGGTT TAATGACAAG
  S
  CTAAGGTTTG AGAGGCATTT GACAAGAGTG GGGACTAGGC TGAACATGGT GACACACACC
  TTTAATCCGA GCGCTGTGGG GTGGGGAGGG TGGGCAAAGG CGACCGGATC CCTGTGGTTT
  TGAGGACAGC CTGGACTATA AATCAGATCC TGTCTCAAAA CCGAAGAAGA CACACAAGAG
  TGGCAACCGG AGGACCAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37239123	NES08507567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27029387					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37239123	NES08507567	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119822873 () rs orientation: forward

Symbol	Name	Function Class
2900060N18Rik	RIKEN cDNA 2900060N18 gene	963 bp downstream
Gm11767	predicted gene 11767	963 bp downstream
Rr461474	regulatory region 461474	1905 bp distal
Rr461475	regulatory region 461475	within coordinates
Rr461476	regulatory region 461476	1103 bp proximal