rs27029388 SNP Detail

Summary

• ID
  rs27029388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119822755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGGGAT AGAAAAGTAA
  CCAAGACACC CTGGCTTTAA AAAAAAAAAA AAAAGAACAA GAACAAGAAA AAAGTTAAGC
  ACAGGAAACT GACTTCACTT CCACATCAGA TGGAGTCACT TAAGGAAAAT CAATGCTCTG
  AGAACGATCA AAGCACACAA AGGTGTAAGC ATCGTCTCTA CAAAAGCAGC AGAGAGCAGC
  R
  GAAGCAACAG CGATGGCCGG CAGGGTTAGG ATTCCAGAGG GGCGGACAGC AGAGAGCAGG
  GCTGACCATC TGCAGCTGGC ACTTGCCAAG TTTTGTCACA CTGGGTTTAA TGACAAGCCT
  AAGGTTTGAG AGGCATTTGA CAAGAGTGGG GACTAGGCTG AACATGGTGA CACACACCTT
  TAATCCGAGC GCTGTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37239124	NES08507566	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27029388					SNP	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37239124	NES08507566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119822755 () rs orientation: forward

Symbol	Name	Function Class
2900060N18Rik	RIKEN cDNA 2900060N18 gene	1081 bp downstream
Gm11767	predicted gene 11767	1081 bp downstream
Rr461474	regulatory region 461474	1787 bp distal
Rr461475	regulatory region 461475	within coordinates
Rr461476	regulatory region 461476	1221 bp proximal