rs27029515 SNP Detail

Summary

• ID
  rs27029515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119727740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAGGAAG GAGAGTGGTA
  GAGACCCTGT CCTCCTAGAC CACAACTAAC CATGGATCTT CAGTGATGTA CCGGGCCTCA
  GACAGACTCG TGGACTGGTG AGCACTGCAG AAGCAGCCCC CCAGTGCAGT CTGTGAATGT
  TAGTGGCAGC ACCTCAGCTT TGCAGTTCTT CAGCTGTGAT GGTAGAAAAG CTAGAGGCTG
  Y
  TGCTGTTTGG ATCTCAAGTG ACTGGGAAAG ACTTGGACTG GAGGAAAGTA GTCTGCAACT
  ATAGGGGTGG AGTGGAGTGG GTGGGGCTCT TAGGTCTTTG AAGGTGTAAT AGCCACGTCA
  CCCCCCTGTT TTCTCTGATT CCTTGCTGCC GTGAGGTGAG TGACTGCTTC CACCTTCCCC
  ACCCTGATCT AGAACCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37239252	NES08509218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27029515					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37239252	NES08509218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119727740 () rs orientation: forward

Symbol	Name	Function Class
Rptor	regulatory associated protein of MTOR, complex 1	within coordinates
Rr239372	regulatory region 239372	within coordinates
Rr369474	regulatory region 369474	within coordinates
Tssr106251	transcription start site region 106251	1313 bp downstream
Tssr106252	transcription start site region 106252	351 bp upstream
Tssr112238	transcription start site region 112238	within coordinates