rs27029516 SNP Detail

Summary

• ID
  rs27029516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119724691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAATCCA AAGTCAGGCA
  TACAAACAGG CATACCACAG GAAGAGCTTC CATGGACAAA GACAACAGGG AAGGAGGTGG
  GATTTTTTTC TTCGGCCCCT ACAACCTGTG TATCCTTTGC AGCTTCCCAG TGTCTGGTTC
  CTCCGCAAAC AGATTCTTCT CTGAATAAAT TTGATCAGGT ACTCAGCCTA ACCTCTCTTG
  Y
  TCCGCATTTT GCCTCTTCAC GTACACAAAG CTCAGTTGGA AGAGAGTTCA ATGTCGGCCT
  CTTCTCTATG GGTCAGGCAT TGTTGAGCAT CCTCCCTGTT CTGCTGGCCC ACCGTGGGGC
  TGCTCTAGGA GGAATGCAGA CTGCCTCTAT CTAGATACCC GTGCTTCCTG CCTGCTAAGC
  TTTGCTTTGG GGGATAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37239253	NES08509251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27029516					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37239253	NES08509251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119724691 () rs orientation: forward

Symbol	Name	Function Class
Rptor	regulatory associated protein of MTOR, complex 1	within coordinates
Rptoros	regulatory associated protein of MTOR, complex 1, opposite strand	within coordinates
Rr239371	regulatory region 239371	891 bp distal
Rr246287	regulatory region 246287	109 bp proximal
Rr249008	regulatory region 249008	1891 bp distal
Rr369474	regulatory region 369474	432 bp upstream
Tssr106251	transcription start site region 106251	1713 bp upstream
Tssr112235	transcription start site region 112235	482 bp downstream
Tssr112236	transcription start site region 112236	543 bp downstream
Tssr112237	transcription start site region 112237	596 bp downstream