rs27030706 SNP Detail

Summary

• ID
  rs27030706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117154998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCAGTA ATCATGTTAT
  CTCTTTGGGG TGGACGGGAG CCGTGGCACA CCCACAAGCA GGCAGGCCTT CTGGAGAGTT
  TCGCTTGGAG CACAGCATCC TCTCCTTGAA GCATGGATTA CAGACCTCTG AGCCCTACAG
  TTCTTTCTTC AGCTAAACTC AAGGCCAGAG CCCAAGACTA TAGAGAGGGA GTTGGGTGAC
  Y
  ACCTAACCTA ATGAAAGTCC CAGAATGCCA CAGCCACCAC ATGTGATCCG AGACAGCTGG
  GATGATGAGA GGGGCTGAGG GGGCTGGGGG TGGGTGGGAC TGGTTCAAAG CCAAGTGGCA
  GTTGGGTTAT CCTGGAGTTT GCAGAAGGTA ATTATGGTGA GAAGGGAGGT ACCCTGCTGT
  TTCCCATTGT CCTCATGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37245237	NES08512937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27030706					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37245237	NES08512937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117154998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4205	CpG island 4205	1591 bp proximal
Gm16045	predicted gene 16045	735 bp upstream
Gm39478	predicted gene, 39478	within coordinates
Rr239189	regulatory region 239189	1998 bp distal
Rr246204	regulatory region 246204	197 bp distal
Rr246205	regulatory region 246205	1002 bp proximal
Rr369453	regulatory region 369453	1575 bp upstream
Septin9	septin 9	within coordinates
Tssr106035	transcription start site region 106035	1985 bp upstream
Tssr112021	transcription start site region 112021	1814 bp downstream
Tssr112022	transcription start site region 112022	1862 bp downstream