rs27032008 SNP Detail

Summary

• ID
  rs27032008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87001668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGTGTG ATTACCATCT
  TAAAATACGC ACAAAATGTT AAATATTGTG GTTAGAGTCT ATCAAACAAC CTGCATGTAA
  ATTCTCTTGT TCCTCTCCCA TAGTATGAAT TCCTTGCACT GGAATAGGTG GAGATATTTT
  TACTTGTTAG AGGCTAATTC TGTGTTTTTA ACGGGTTGCT TTTTGTAATT GGTGGATCAA
  K
  TTCTGAGCTT TATCTAACCC TTCCATTGCA ATCAATTCTC AAACTTTTAA AAAATATTGA
  GCAAATTATC TTAAAGAAAA TACAAGTTAA ACATCCTGTT AAAGGTAAGT TTTAGGAAGT
  TATGAGGTTG TTGAACTTTA ACATATTTTA GATACTGTAT AAATTATGGT CTAGCTTTAA
  CATTTCTTTT TTCAGAGGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37229049	NES08594467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		T	G	G	T		G
ss323772679	CHEV_11_86924344	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27032008					SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229049	NES08594467	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87001668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			640 bp distal
Gm73625	predicted gene, 73625			582 bp downstream
Rr369312	regulatory region 369312			1902 bp downstream
Rr453747	regulatory region 453747			1320 bp distal
Rr453748	regulatory region 453748			332 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			1647 bp downstream
Tssr103906	transcription start site region 103906			1603 bp downstream
Tssr103907	transcription start site region 103907			1568 bp downstream
Tssr103908	transcription start site region 103908			1259 bp downstream