rs27032009 SNP Detail

Summary

• ID
  rs27032009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87001478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCAGGT GTTTCAAACA
  CATTTTATTA GAAAGATTTC CAGTCTTGTT TAACATTGTA TTTTAAAACT TTCTTTGTGG
  AGGGAGTGTG GGGATGGGGG CGGGGGTGGG GGGAGAGAAG AGGAGAAGAA TTTTCTGCTG
  CTTTCCAAAT CTTGAAAAAA TGAATATTTG ACTTAAGAAT TTTTCGTGTG TGGGTGTGTG
  R
  TTACCATCTT AAAATACGCA CAAAATGTTA AATATTGTGG TTAGAGTCTA TCAAACAACC
  TGCATGTAAA TTCTCTTGTT CCTCTCCCAT AGTATGAATT CCTTGCACTG GAATAGGTGG
  AGATATTTTT ACTTGTTAGA GGCTAATTCT GTGTTTTTAA CGGGTTGCTT TTTGTAATTG
  GTGGATCAAG TTCTGAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37229050	NES08594465	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27032009					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229050	NES08594465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87001478 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			450 bp distal
Gm73625	predicted gene, 73625			392 bp downstream
Prr11	proline rich 11			1944 bp upstream
Rr369312	regulatory region 369312			1712 bp downstream
Rr453746	regulatory region 453746			1955 bp distal
Rr453747	regulatory region 453747			1130 bp distal
Rr453748	regulatory region 453748			142 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			1457 bp downstream
Tssr103906	transcription start site region 103906			1413 bp downstream
Tssr103907	transcription start site region 103907			1378 bp downstream
Tssr103908	transcription start site region 103908			1069 bp downstream
Tssr109946	transcription start site region 109946			1933 bp upstream
Tssr109947	transcription start site region 109947			1893 bp upstream
Tssr109948	transcription start site region 109948			1869 bp upstream