rs27032011 SNP Detail

Summary

• ID
  rs27032011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87000775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAAGT CCACCATGCA
  CCTACTCGCA GGCGAGCTGG GACAGTCTGA AAGAAGATGC TAGACTTGCA CGAGAAACTT
  GCCCGCGGTT CCGCAGACTG GGCTCTTTGC GGCTTGGGAG AGGAGCCGCC GCGGGGACCG
  AGCCTGGAGC TCCTTCCCGG GGCGCGAGCG GCGTTGCCCC AGGCCCGGCT TTCTGCTTCC
  Y
  AGATGCTCAA TTCCTTTCCT CTGTGCAAGG AGAACCCTGG ACGAAGGCCC TCAGCGGCTG
  CGGGCAAGGC TGGAGTGCAC TGAGCGTCCA GCCGAGTGGC CTTGTCATTC TCCATCAGTG
  TTCTCTTTAT TCCCGCCCTC CCATCCTTCC ACTGCCCGCT AGATCGCCGC GCCTTTTTTC
  TTAGTTTTCT TGTTCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37229052	NES08594463	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27032011					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229052	NES08594463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87000775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			within coordinates
Gm73625	predicted gene, 73625			within coordinates
Prr11	proline rich 11			1241 bp upstream
Rr369312	regulatory region 369312			1009 bp downstream
Rr453746	regulatory region 453746			1252 bp distal
Rr453747	regulatory region 453747			427 bp distal
Rr453748	regulatory region 453748			within coordinates
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			754 bp downstream
Tssr103906	transcription start site region 103906			710 bp downstream
Tssr103907	transcription start site region 103907			675 bp downstream
Tssr103908	transcription start site region 103908			366 bp downstream
Tssr109946	transcription start site region 109946			1230 bp upstream
Tssr109947	transcription start site region 109947			1190 bp upstream
Tssr109948	transcription start site region 109948			1166 bp upstream