rs27032012 SNP Detail

Summary

• ID
  rs27032012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87000389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGAAGC GCATTTTAGA
  GTCTCCTGAA ACTGGGTTGT GGAAGCTGGA ACCTGAATTG AGTTCCTTCT TTCTGCACCT
  ACGGGAGCTA CCGCCGCCTT GGTCTCTTAA CCGCCGCGGG GGAAGGGGTT ACATCCGGGG
  AACTCGTGAG GGAAATGGCG GGAGATGTTG AGGGTGTGGG GCCTTTGTAA TTCCCTGGTC
  S
  TGGTTTTCTC CTTCATCGGC TCCAGGAGCC GCGCCCGGCA CAGATACCGC CTCACGAATT
  TCTACCTTCC TTGCCCAAGC GTGACTGGAA CGGTCTTTAA TAGCTCGGAG GAGGAGAGAG
  GTCGTTTACG TCTCCCGAAA AGGGGGATGG AGGATGAGGT GGGGCAGAAG TCTAGGGGCG
  CGGAGAAATT CAAGTCCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229053	NES08594462	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032012					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229053	NES08594462	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87000389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			within coordinates
Gm73625	predicted gene, 73625			within coordinates
Prr11	proline rich 11			855 bp upstream
Rr369312	regulatory region 369312			623 bp downstream
Rr453746	regulatory region 453746			866 bp distal
Rr453747	regulatory region 453747			41 bp distal
Rr453748	regulatory region 453748			within coordinates
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			368 bp downstream
Tssr103906	transcription start site region 103906			324 bp downstream
Tssr103907	transcription start site region 103907			289 bp downstream
Tssr103908	transcription start site region 103908			within coordinates
Tssr109946	transcription start site region 109946			844 bp upstream
Tssr109947	transcription start site region 109947			804 bp upstream
Tssr109948	transcription start site region 109948			780 bp upstream