rs27032013 SNP Detail

Summary

• ID
  rs27032013
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87000335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGAGTG AAGGAAACCT
  ACTGGGTAAT TAATGTGCTC CACCGATGGC CTAGAAGGTG AAGCGCATTT TAGAGTCTCC
  TGAAACTGGG TTGTGGAAGC TGGAACCTGA ATTGAGTTCC TTCTTTCTGC ACCTACGGGA
  GCTACCGCCG CCTTGGTCTC TTAACCGCCG CGGGGGAAGG GGTTACATCC GGGGAACTCG
  W
  GAGGGAAATG GCGGGAGATG TTGAGGGTGT GGGGCCTTTG TAATTCCCTG GTCCTGGTTT
  TCTCCTTCAT CGGCTCCAGG AGCCGCGCCC GGCACAGATA CCGCCTCACG AATTTCTACC
  TTCCTTGCCC AAGCGTGACT GGAACGGTCT TTAATAGCTC GGAGGAGGAG AGAGGTCGTT
  TACGTCTCCC GAAAAGGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229054	NES08594461	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032013					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229054	NES08594461	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87000335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			within coordinates
Gm73625	predicted gene, 73625			3 bp upstream
Prr11	proline rich 11			801 bp upstream
Rr369312	regulatory region 369312			569 bp downstream
Rr453746	regulatory region 453746			812 bp distal
Rr453747	regulatory region 453747			within coordinates
Rr453748	regulatory region 453748			14 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			314 bp downstream
Tssr103906	transcription start site region 103906			270 bp downstream
Tssr103907	transcription start site region 103907			235 bp downstream
Tssr103908	transcription start site region 103908			51 bp upstream
Tssr109946	transcription start site region 109946			790 bp upstream
Tssr109947	transcription start site region 109947			750 bp upstream
Tssr109948	transcription start site region 109948			726 bp upstream