rs27032015 SNP Detail

Summary

• ID
  rs27032015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86999986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTTCCG AGTACACCAA
  TCGCAAACTC TTTTCCAAGT ATGAACTTGA AAGTAGGGAC CATAAGGCAG CCAATGGAAA
  AATTCATATA TTCAGCAGCC AATCCCCCTG CGGCGTTTTG TGTCTTTGTC CAACAGGAAA
  GTGCGTTTTA TAACGAGGGG CGTTACCCAG GCGCCAATGG GCGGGCGCCG ATGGAACGTA
  Y
  TAGCCAATGA GCGCAAGACG TTGAGTGACA GCTGTCCAAT GGAGGGCCTC AGTGCTAGCA
  CGGCTTACAG CTTAAGCGCC TCAGCGGTCT GAGGAATGTC AACTATTCAA TATGGAGGCG
  GAGGTCGATA AGCTGGAACT GATGGTGAGT GGAGAGTGAA GGAAACCTAC TGGGTAATTA
  ATGTGCTCCA CCGATGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229056	NES08594459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032015					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229056	NES08594459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86999986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3483	CpG island 3483	within coordinates
Gm73625	predicted gene, 73625	352 bp upstream
Prr11	proline rich 11	452 bp upstream
Rr369312	regulatory region 369312	220 bp downstream
Rr453746	regulatory region 453746	463 bp distal
Rr453747	regulatory region 453747	within coordinates
Rr453748	regulatory region 453748	363 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2	101 bp upstream
Tssr103905	transcription start site region 103905	21 bp upstream
Tssr103906	transcription start site region 103906	61 bp upstream
Tssr103907	transcription start site region 103907	92 bp upstream
Tssr103908	transcription start site region 103908	400 bp upstream
Tssr109946	transcription start site region 109946	441 bp upstream
Tssr109947	transcription start site region 109947	401 bp upstream
Tssr109948	transcription start site region 109948	377 bp upstream