rs27032017 SNP Detail

Summary

• ID
  rs27032017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:86998650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC TTCTTCATGA GTTGACACTG
  Y
  TGGTTCTTTA AGAACTCCAT CAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37229058	NES08594470	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		C	C	C	C	T	C
ss38849493	mCV24278728	ABI	CRAMUS_MOUSE	f	SNP		C	T			C
ss132510972	ENSMUSSNP3790373	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27032017					SNP	T	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229058	NES08594470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86998650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3483	CpG island 3483	891 bp proximal
Gm73625	predicted gene, 73625	1688 bp upstream
Prr11	proline rich 11	Intron
Rr369312	regulatory region 369312	815 bp upstream
Rr453746	regulatory region 453746	271 bp proximal
Rr453747	regulatory region 453747	874 bp proximal
Rr453748	regulatory region 453748	1699 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2	1437 bp upstream
Tssr103905	transcription start site region 103905	1357 bp upstream
Tssr103906	transcription start site region 103906	1397 bp upstream
Tssr103907	transcription start site region 103907	1428 bp upstream
Tssr103908	transcription start site region 103908	1736 bp upstream
Tssr109946	transcription start site region 109946	832 bp downstream
Tssr109947	transcription start site region 109947	912 bp downstream
Tssr109948	transcription start site region 109948	942 bp downstream