rs27032063 SNP Detail

Summary

• ID
  rs27032063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86965407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCAGGC CAGGTCCTAG
  TCCTTTCTGT GGGAAAAGCG AAGAATTGTT ACTGATACCT CGAACTCGTA GCCTAGTTGG
  TTAGATCGTA CGGGATTCAA GCCCCAGTAC AAAATAAACA TGAATAAAGA AACTGACCAC
  TAAGTCCTTT CCTATAAAGA CTGGCAACTA ACTTTTCCAT TTTTCTTTTT CATCTCCTAC
  S
  TTACAAACTA GAAATACAGT AGGAACCACG TTTTATGGGG GCAGGGTCTT GGTTTTGTGA
  GATAGGATCT ACTTAGCCCA GTCCGGGCTT GAATTCACTA TATACCAGAG GATAGAGTCT
  TCGACTTCAG GTTCTTCTAC CTCAGCCTCC AGAGTGTTGG GATGGTAGGC AAGCCCAGCT
  GTGGATCGTA TTTTATGCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229105	NES08584481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032063					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229105	NES08584481	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86965407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3481	CpG island 3481	117 bp distal
Gdpd1	glycerophosphodiester phosphodiesterase domain containing 1	519 bp upstream
Gm11479	predicted gene 11479	within coordinates
Gm74414	predicted gene, 74414	within coordinates
Rr453739	regulatory region 453739	1272 bp distal
Rr453740	regulatory region 453740	392 bp distal
Rr453741	regulatory region 453741	498 bp distal
Rr453742	regulatory region 453742	within coordinates
Tssr109941	transcription start site region 109941	510 bp upstream
Tssr109942	transcription start site region 109942	465 bp upstream
Tssr109943	transcription start site region 109943	450 bp upstream