rs27032064 SNP Detail

Summary

• ID
  rs27032064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86965230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGTGGT CCCACGCGCA
  GGTGCTTCGA AGAAGACCCC GAGGCAAGAG GTTGGAAACT TGCCAGTGGT TTTATTTGTT
  TGGATTTGTT TGGGCAGTCC CTAAGCCGAA AACGCTCTCA AGCCAGGATA GCCTTCGGGG
  AAAATCTGAC GTAACTGGGA AATGTGCATC AAAGGAGGAT TCCAGGCCAG GTCCTAGTCC
  Y
  TTCTGTGGGA AAAGCGAAGA ATTGTTACTG ATACCTCGAA CTCGTAGCCT AGTTGGTTAG
  ATCGTACGGG ATTCAAGCCC CAGTACAAAA TAAACATGAA TAAAGAAACT GACCACTAAG
  TCCTTTCCTA TAAAGACTGG CAACTAACTT TTCCATTTTT CTTTTTCATC TCCTACCTTA
  CAAACTAGAA ATACAGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229106	NES08584480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032064					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229106	NES08584480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86965230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3481	CpG island 3481	within coordinates
Gdpd1	glycerophosphodiester phosphodiesterase domain containing 1	342 bp upstream
Gm11479	predicted gene 11479	within coordinates
Gm74414	predicted gene, 74414	within coordinates
Tssr109941	transcription start site region 109941	333 bp upstream
Tssr109942	transcription start site region 109942	288 bp upstream
Tssr109943	transcription start site region 109943	273 bp upstream