rs27032066 SNP Detail

Summary

• ID
  rs27032066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86964356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACATTTC TCTCCAGAGC
  TCAATTACAA ACGCGTGGAG CGTGGCATCG CAGACTCCTC AGCTCTCGCT CCAGGTACTC
  GCAGATCCTC AGCTCTGCCG GAGCCCAAGC TCTTCCCCAC GGACTCAGCC ACCAGCCTAT
  TCCAAGCAGT CTGTCCGTTC CTACTTCCCC CTGCGGGTGT CTCCTGGATC TGCACCGGCT
  W
  TGTGCCAGGC TGCCAAGAAG GGACCTCCCG ATCATCCCTC CATCGGCCGA GGAACGCCCC
  ACTTCTGTCT CTCATCCTGC GCTTCTCCTC CTCACAGAAG CCCTGTCACC CTAGCTCCCC
  AGAGACGCCC ACCAGGACTG GGACACGAGA CCCCTTTCCT TCCCTCCCCT CCGGACCACT
  CATCTGAGGA AGCCCTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229108	NES08584478	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032066					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229108	NES08584478	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86964356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3481	CpG island 3481	within coordinates
Gdpd1	glycerophosphodiester phosphodiesterase domain containing 1	within coordinates
Gm11479	predicted gene 11479	725 bp downstream
Gm74414	predicted gene, 74414	within coordinates
Rr453739	regulatory region 453739	221 bp distal
Rr453740	regulatory region 453740	522 bp proximal
Rr453741	regulatory region 453741	532 bp proximal
Rr453742	regulatory region 453742	660 bp proximal
Tssr109941	transcription start site region 109941	525 bp downstream
Tssr109942	transcription start site region 109942	543 bp downstream
Tssr109943	transcription start site region 109943	590 bp downstream