rs27032069 SNP Detail

Summary

• ID
  rs27032069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86963044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCTCCT GGCAGATGGG
  AGGTCAGACA GGAGAATCCC CAACTCCCAC ACTCGAGCTT ACTGGTGAAT CCAGCCTCGA
  ATAACAAAAG ACTTCATTTC AAACACAGTG AAACATAAGG ACCAACATGC GATACTGTCC
  TCCAACCTCT ACACATGCTC TGGAACATGT ATGTGCCTAC ACTCACAGGC AAACACGCCA
  Y
  ACGCCTATAC ACAGACATAT TAATCACCAG GAGCTGGGCA TGGTGGTCCA AGTCTTTATT
  CCCAGCACTT GGGAGGCAGA GGCAGGTAGG TCTCTGAATT TTAGGCTAGC CTGGTCTACT
  GATTGAGTCC TAGGACAGTC AGGGCCACAG AGAAAGAAAA CCAAACAAAA AGTGGGAAAC
  TGTGTTTAAC TGATAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37229111	NES08584543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27032069					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229111	NES08584543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86963044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3481	CpG island 3481	1138 bp proximal
Gdpd1	glycerophosphodiester phosphodiesterase domain containing 1	within coordinates
Gm74414	predicted gene, 74414	1081 bp upstream
Rr453739	regulatory region 453739	991 bp proximal
Rr453740	regulatory region 453740	1834 bp proximal
Rr453741	regulatory region 453741	1844 bp proximal
Rr453742	regulatory region 453742	1972 bp proximal
Tssr109941	transcription start site region 109941	1837 bp downstream
Tssr109942	transcription start site region 109942	1855 bp downstream
Tssr109943	transcription start site region 109943	1902 bp downstream