rs27037148 SNP Detail

Summary

• ID
  rs27037148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102835595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGAGCC TCCCAGTTTG
  GTCAGGAACC AAGGACAAAG AGGAGAGACA CCAGAAGCCT GATAGACACA AATGGGAGAG
  AGTCACAGCA ATAGAGAAGT GGGGGGAGGT GAACCCAGAG AAGAGAGACA GAGATGAATG
  GCAGATTCCA GTAAGAAATG GTCAAAAGAC AGAGCAAGAA GAGGCAGACA CGATAGTGGG
  R
  ACTGGGAGGA GCAGGCAGAA GAAAAAAAGA GGACAGACTT CCACACAGAT AGGCTTTCTG
  CCCTTTCTCC TATCCCCAAA CTTTGCAGAT ACCCAAGCAG GGTAGTGCTG CAGTGGGAGG
  GGTTCCGAGA AGATCTGGAG TCTCAATTGT AGGGGATTCC TTCCAGCTTC CACTTGCCTA
  CCCTCAATTT TGACCCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37279088	NES08553596	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27037148					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279088	NES08553596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102835595 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	within coordinates
Cpgi3944	CpG island 3944	505 bp proximal
Rr457458	regulatory region 457458	1909 bp proximal
Tssr111125	transcription start site region 111125	1242 bp downstream
Tssr111126	transcription start site region 111126	1779 bp downstream
Tssr111127	transcription start site region 111127	1932 bp downstream
Tssr111128	transcription start site region 111128	1972 bp downstream
Tssr111129	transcription start site region 111129	2000 bp downstream